All software
Overture Maestro
Organizing your distributed data into one index.
- Data Indexing
- Elasticsearch Automation
- Dockerfile
- JavaScript
- Makefile
- + 1
Overture Score
Transfer data quickly and easily to and from any cloud-based storage system.
- Cancer Genomics
- Cloud Storage & Transfer
- Dockerfile
- Java
- Makefile
- + 1
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- Batchfile
- Dockerfile
- Go
- + 7
PanTools-pipeline-v4
General purpose Snakemake pipeline for PanTools v4.
- Data Analysis
- genomics
- pangenomics
- Dockerfile
- Python
- Shell
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 17
PlanEO Dashboard
Provides an interactive interface for visualizing geographical data relevant to the MINE-DD project, including pathogen distribution, risk factors, and demographic analysis through both point data and raster overlays.
- Data Analysis
- Demographic Analysis
- Geographic Visualization
- + 8
- CSS
- Dockerfile
- HTML
- + 5
PlatiPy
Aims to simplify use, visualization, processing, and analysis of medical images. Built on SimpleITK, VTK.
- Imaging and Image Processing
- CSS
- Dockerfile
- HTML
- + 4
PyELSEPA
Python wrapper for ELSEPA, a numeric code for computing elastic scattering cross-sections for electrons and positrons off neutral atoms.
- Dockerfile
- Python
pyOrthanc
PyOrthanc makes it easy to work with DICOM medical images stored on Orthanc servers using Python - instead of dealing with the DICOM protocol directly or creating complex code to interact with Orthanc's REST API.
- Software Engineering and Data Infrastructure
- Dockerfile
- Python
PyRadiomics
PyRadiomics is an open-source python package for the extraction of Radiomics features from medical imaging
- Imaging and Image Processing
- Batchfile
- C
- CMake
- + 4
PyStemmusScope
A python package for running the STEMMUS-SCOPE model
- Dockerfile
- Jupyter Notebook
- Python
- + 1
pyxmake
Harmonized interfaces and workflows to selected software development tools.
- python
- Workflow Execution
- Dockerfile