All software
mytoken
Mytoken is a web service to obtain OpenID Connect Access Tokens in an easy but secure way for extended periods of time and across multiple devices. In particular, mytoken was developed to provide OIDC Access Tokens to long-running compute jobs.
- AAI
- Helmholtz AAI
- OIDC
- + 2
- Go
- Svelte
- TypeScript
- + 5
NanopubJL
JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook
- Inter-operability & linked data
- CSS
- Dockerfile
- JavaScript
- + 3
Noodle Biomedical Literature Discovery
Public, read-only biomedical literature search, publication inspection, and bounded citation and semantic graph traversal through a hosted MCP server.
- bioinformatics
- biomedical literature
- citation graph
- + 5
- Dockerfile
- Jupyter Notebook
- Python
- + 1
NovaCrate
Web-based interactive editor for creating, editing and visualizing research object crates.
- browser
- crate
- edit
- + 14
- TypeScript
- CSS
- JavaScript
- + 1
ODM2SMS
A tool to migrate sensor metadata from the observation data model to the Helmholtz Sensor Management System via API.
- Earth & Environment
- metadata
- Research Data Management
- + 1
- Python
- PLpgSQL
- Dockerfile
OFFA
OFFA offers easy to use OpenID Federation Authentication and Authorisation for existing services. OFFA can be deployed along existing services and handle all OpenID Federation communication for your services.
- OIDC
- oidfed
- open source
- Go
- CSS
- Mustache
- + 3
Openclatura
Openclatura is a deterministic SMILES-to-IUPAC name rule-based generator derived form the IUPAC Blue Book 2013 recommendations.
- Chemistry
- iupac
- open source
- + 2
- Python
- HTML
- Shell
- + 1
openPMD-api
openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.
- ADIOS
- data
- file-format
- + 8
- C++
- Python
- CMake
- + 5
opynsim
Python-Native Musculoskeletal Modelling
- Batchfile
- BitBake
- C
- + 14
oTree Development Environment
A Docker environment for programming against multiple oTree server
- oTree
- Dockerfile
- Makefile
- Shell
Overture Data Management System
Overture is a collection of open-source, extendable solutions for big-data genomic science that research institutions and individual researchers can use to support their work.
- authentication
- cloud storage
- genomics
- + 2
- Dockerfile
- Java
- Makefile
- + 1
Overture Ego
A stateless authorization and user management service.
- Data Indexing
- Elasticsearch Automation
- Dockerfile
- Java
- Makefile
- + 1