All software
PeriHub
PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.
- Data Visualization
- High performance computing
- Modelling
- + 2
- Python
- Vue
- TypeScript
- + 7
PostWRF
PostWRF is a bunch of interactive tools, written in NCL and Bash scripts, to visualize and post-process the WRF and ERA5 model outputs.
- NCL
- Shell
- Python
pyGMS
pyGMS: lithosphere-scale rheological analyses of GMS models with Python
- geophysics
- geothermal modeling
- GMS
- + 2
- Python
- Makefile
PyPlaque
PyPlaque is an open-source Python package for automated analysis of virus plaque assays. It quantifies plaque morphology, size, and intensity from plate images, integrates with Python data tools, and enables reproducible, customizable workflows for high-throughput infection biology studies.
- Health
- Image processing
- Omics
- + 1
- Jupyter Notebook
- Python
quark
is a software package to support the mapping of combinatorial optimization problems to quantum computing interfaces via QUBO and Ising problems.
- Discrete Optimization
- Ising Problem
- Quantum Annealing
- + 2
- Python
- Shell
quinex
quinex automates the large-scale extraction of quantitative information from text across many domains using lightweight and open language models
- information extraction
- Large Language Model (LLM)
- Measurement Extraction
- + 4
- Python
- TypeScript
- Shell
- + 3
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
SciTS
A tool to benchmark Time-series on different databases.
- Benchmark
- Benchmarking
- database
- + 3
- Jupyter Notebook
- HTML
- C#
- + 2
sdaas
Simple machine learning tool in Python computing an anomaly score of seismic waveform amplitudes. By using a pre-trained Isolation forest model, the program can be used for identification of outliers in semismic data, assign robustness weights, or check instruments and metadata errors
- Machine learning
- outlier detection
- seismic metadata
- + 2
- Python
UrMoAC
UrMoAC is a tool for computing accessibility measures, supporting aggregation, variable limits, and intermodality.
- accessibility measures
- land-use indicators
- Java
- Python
- Batchfile
VASCA
The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.
- Astronomy
- catalogue
- Data analysis
- + 6
- Jupyter Notebook
- Python