All software
methylKit
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.
- R
- C++
- TeX
Mimetic Operators Library Enhanced (MOLE)
MOLE is a high-quality (C++ & MATLAB/Octave) library of high-order mimetic operators to solve partial differential equations. It provides discrete analogs of vector calculus operators: Gradient, Divergence, Laplacian, Bilaplacian, and Curl. These operators satisfy local and global conservation laws.
- Mathematical Software
- Mimetic Operators
- Partial differential equations
- C
- C++
- CMake
- + 4
Minion
Minion is an optimization library designed for solving complex optimization problems where gradients are unavailable or unreliable. It implements state-of-the-art evolutionary algorithms which are often missing in standard optimization libraries.
- C++
- optimization
- python
- C++
- Python
- Jupyter Notebook
- + 4
MITK
Combines ITK and VTK with an application framework. Aims to reduce effort for interactive medical image analysis applications.
- Imaging and Image Processing
- Batchfile
- C
- C++
- + 8
MONAI
Project MONAI is revolutionizing medical imaging through a comprehensive ecosystem of AI tools
- Artificial Intelligence
- C
- C++
- Cuda
- + 4
MooViE
MooViE is an easy-to-use tool to display multidimensional data with input-output semantics from all research domains. It supports researcher in studying the mapping of several inputs to several outputs in large multivariate data sets.
- C++
- Data Visualization
- C++
- CMake
- Dockerfile
- + 2
Multiphase Python Repository by HZDR
Toolkit for reproducible multiphase CFD workflows.
- gitlab
- Numerical Simulations
- Post-processing
- + 1
- Python
- Jinja
- Shell
- + 2
NeuralBloch.jl
Julia package that runs the NeuralBloch neural surrogate of MR signals on NVIDIA GPUs with TensorRT. It predicts signals, T₁/T₂ derivatives and basis coefficients
- GPU
- High performance computing
- Julia Package
- + 2
- C++
- Julia
Nexus - Nuclear Elastic X-ray scattering Universal Software
The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Mossbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities, and polarization dependent electronic scattering.
- Mossbauer
- Mossbauer spectroscopy
- Nuclear resonant scattering
- + 1
- C++
- Python
- SWIG
- + 2
oidc-agent
oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.
- AAI
- command-line
- OIDC
- + 2
- C
- C++
- Makefile
- + 4
OpenDA
Open data assimilation toolbox. OpenDA is an open interface standard for a set of tools to quickly implement data-assimilation and calibration for arbitrary numerical models.
- Optimized data handling
- Batchfile
- Brainfuck
- C
- + 23
openFuelCell2
openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.
- Electrolyzer
- Energy
- Fuel cells
- + 1
- C
- C++
- Python
- + 2