All software
KNIME node for Kripo
A node for the KNIME workflow systems that allows you to compare different binding sites in proteins with each other.
- Workflow technologies
- Java
KNIME Testflow
Allows you to test KNIME nodes automatically using JUnit.
- Workflow technologies
- Java
kramersmoyal
The Python package `kramersmoyal` provides functions to analyze stochastic drift-diffusion and discontinuous stochastic processes in observational and experimental data.
- Data analysis
- Drift-Diffusion
- Energy
- + 5
- Python
- TeX
XCASCADE (3D)
XCASCADE (3D) software models electron cascades in solids induced by X-ray impact or by an impact of high-energy electron in non-relativistic energy regime. The code can provide temporal and spatial characteristics of the excited electrons, such as their transient density and energy.
- Electron cascading
- Modeling
- Monte Carlo simulation
- + 3
- Fortran Free Form
- Makefile
- Shell
KNIME Pharmacophore
A plugin for the KNIME workflow system that adds a Pharmacophore data type and nodes to read, write, and align them.
- Workflow technologies
- Java
KNIME PLANTS
A node for the KNIME workflow system that allows you to use the PLANTS protein-ligand docking algorithm.
- Workflow technologies
- Java
- Mustache
KNIME Python node archetype
Want to write your own KNIME node wrapping a Python library. Then use the KNIME Python node archetype to generate a node skeleton repository with sample code
- Big data
- Workflow technologies
- Java
- Python
KNIME Python wrapper
If you are developing a KNIME node which calls some Python code, then the KNIME Python wrapper can help you.
- Workflow technologies
- Java
- Python
KNIME molecule viewer nodes
A 3D viewer for large molecules for the KNIME workflow system.
- Visualization
- Workflow technologies
- Java
- JavaScript
- CSS
KNIME ss-TEA node
A node for the KNIME workflow systems that allows you to identify which residue position in a big protein sequence alignment is specific to ligand binding.
- Workflow technologies
- Java
LYNX
LYNX (Lithosphere dYnamics Numerical toolboX) is a novel numerical simulator for modelling thermo-poromechanical coupled processes driving the deformation dynamics of the lithosphere.
- damage rheology and porosity feedback
- Earth & Environment
- Explicit visco-elasto-plastic rheology
- + 1
- C++
- Assembly
- Makefile
- + 4
sv-callers
Highly portable parallel workflow to detect structural variants in cancer genomes.
- Big data
- High performance computing
- Workflow technologies
- Python
- Shell