All software
NeXusCreator
Python CLI & API for converting heterogeneous experimental data into validated NeXus (HDF5) files using reusable mapping templates and extensible workflows.
- Python
- Makefile
- Shell
nnU-Net
Automatic configuration and training of U-Net-based segmentation pipelines. Works out-of-the-box for a broad range of datasets from all imaging domain! Supports 2D and 3D (multi-channel) images.
- 2D images
- 3D images
- semantic segmentation
- + 1
- Python
- Shell
OCR4all
OCR4all combines open-source solutions to provide a fully automated workflow for automatic text recognition of historical printed and handwritten material. The user can interact with the results to minimize errors and optimize the end result. (Cited from: https://www.ocr4all.org/about/ocr4all)
- Handwritten Text Recognition
- images
- OCR
- Java
- JavaScript
- CSS
- + 1
OFFA
OFFA offers easy to use OpenID Federation Authentication and Authorisation for existing services. OFFA can be deployed along existing services and handle all OpenID Federation communication for your services.
- OIDC
- oidfed
- open source
- Go
- CSS
- Mustache
- + 3
oidc-agent
oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.
- AAI
- command-line
- OIDC
- + 2
- C
- C++
- Makefile
- + 4
openFuelCell2
openFuelCell2 is a computational fluid dynamics (CFD) toolbox for simulating electrochemical devices such as fuel cells and electrolysis. The solver is based on the open-source library, OpenFOAM®.
- Electrolyzer
- Energy
- Fuel cells
- + 1
- C
- C++
- Python
- + 2
openPMD-api
openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.
- ADIOS
- data
- file-format
- + 8
- C++
- Python
- CMake
- + 5
OxyPOM
OxyPOM: a biogeochemical model for Oxygen and Particulate Organic Matter dynamics with detailed temperature sensitivity
- Biogeochemistry
- Hypoxia
- Phytoplankton viral infection
- + 2
- Fortran Free Form
- R
- Shell
- + 2
ParFlow
ParFlow is a parallel, integrated hydrology model that simulates spatially distributed surface and subsurface flow.
- Earth System Modelling
- High performance computing
- Hydrology
- + 2
- C
- Tcl
- Python
- + 17
Peary
This is Peary Caribou, a data acquisition software framework for the Caribou DAQ system. It provides hardware abstraction for periphery components such as voltage regulators and simplifies direct detector configuration and data acquisition through a common interface.
- C++
- DAQ
- Matter
- C++
- CMake
- C
- + 2
PHYLIP
PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables.
- phylogeny
- Stemmatology
- C
- Java
- Shell
- + 5
PiGx
PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.
- HTML
- Python
- R
- + 7