All software
pertpy
Pertpy is a Python-based modular framework for the analysis of large-scale single-cell perturbation experiments.
- perturbation
- scverse
- single-cell RNA-seq
- Python
mpcrl-greenhouse
Software underlying publication: Reinforcement learning-based model predictive control for greenhouse climate control
- Agriculture
- Greenhouse climate control
- Model predictive control
- + 1
- Markdown
- Other
- Python
Syndat
Syndat is a python package that provides functionalities for the evaluation and visualization of synthetic data.
- Clinical Data
- data privacy
- Data Quality
- + 3
- Python
Syndat Dashboard
A Dashboard for evaluation & visualization of synthetic patient level data.
- data fidelity
- data privacy
- Interactive Dashboard
- + 1
- CSS
- Dockerfile
- HTML
- + 3
ChASE
ChASE is a modern and scalable library to solve dense Hermitian (Symmetric) algebraic eigenvalue problems based on a spectral polynomial filter. The library is fully parallelized, and is particularly effective for sequences of eigenproblems as they often arise in electronic structure theory.
- C++
- Eigensolver
- GPU
- + 6
- C++
- Cuda
- CMake
- + 6
LiberTEM
LiberTEM is an open source platform for high-throughput distributed processing of large-scale binary data sets and live data streams using a stream-based programming model. The current focus is pixelated scanning transmission electron microscopy (4DSTEM) and scanning electron beam diffraction data.
- 4D STEM
- electron microscopy
- high-throughput
- + 3
- Python
- TypeScript
- JavaScript
- + 6
MUSCLE3
MUSCLE3 is a coupling library for building multiscale simulations out of single-scale models.
- High performance computing
- Multi-scale & multi model simulations
- C
- C++
- Dockerfile
- + 4
OMUSE
A Python environment to interface and couple oceanographic and other earth system model codes.
- High performance computing
- Multi-scale & multi model simulations
- Batchfile
- C
- C++
- + 10
syndat
Syndat is a python package for evaluation and visualization of synthetic data.
- clinical data
- data privacy
- data quality
- + 3
- Python
Syndat Dashboard
A Dashboard for evaluation & visualization of synthetic patient level data.
- clinical data
- data privacy
- data quality
- + 2
- TypeScript
- Python
- CSS
- + 3
Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes
Data underlying the publication/thesis chapter: FlexConv: Continuous Kernel Convolutions with Differentiable Kernel Sizes
- computer vision
- Convolutional Neural Network
- kernel size
- + 2
- Jupyter Notebook
- Markdown
- Other
- + 2
DeepRank2
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.
- Cancer vaccine
- Convolutional Neural Network
- Deep Learning Framework
- + 5
- Dockerfile
- Jupyter Notebook
- Python
- + 1