All software
UrbEm - Urban Emission downscaling for air quality modeling
UrbEm enables in a modular manner downscaling of gridded regional emissions with specific spatial proxies based on a variety of open access, robust, sustainable and frequently updated sources. UrbEm can be applied to any urban area in Europe and provides methodological homogeneity between cities.
- Air quality
- Chemistry Transport Modeling
- Earth & Environment
- + 2
- Python
- R
Ersilia Model Hub
The Ersilia Model Hub is an open source platform to serve AI/ML models for infectious disease drug discovery.
- AI
- Chemistry
- Drug discovery
- + 1
- Python
- Jupyter Notebook
- Dockerfile
QMflows
Construction and efficient execution of computational chemistry workflows.
- Multi-scale & multi model simulations
- Workflow technologies
- Python
- Jupyter Notebook
- Shell
CHI2023_DKE
User Interaction Dataset for CHI 2023 paper "Knowing About Knowing: An Illusion of Human Competence Can Hinder Appropriate Reliance on AI Systems."
- Appropriate Reliance
- DunningKruger Effect
- Human-AI Decision Making
- + 1
- Python
- Other
- Markdown
- + 2
MPI.jl
MPI wrappers for Julia
- HPC
- Julia Package
- MPI
- Julia
- Shell
Glotaran
Glotaran: A Java-Based Graphical User Interface for the R Package TIMP
- global analysis
- target analysis
- time-resolved spectroscopy
- Java
- HTML
NPLinker Web Application
This is the NPLinker web application, developed with Plotly Dash. It enables interactive visualization of NPLinker predictions and is designed to be run locally or in a containerized environment.
- Data mining
- Genome
- Metabolome
- + 2
- Python
- CSS
- Dockerfile
- + 1
PanTools
PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.
- Data Analysis
- Gene classification
- pangenomics
- Java
- Snakemake
- Python
- + 1
Code to paper: Review of image segmentation techniques for the layup defect detection in the Automated Fiber Placement process
Code to paper: Review of image segmentation techniques for the layup defect detection in the Automated Fiber Placement process
- dlr
- fiber placement
- inspection
cola
Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
VarFish
VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...
- Annotation
- Data analysis
- Health
- + 1
- Python
- Vue
- TypeScript
- + 9
KaGen - Communication-free Massively Distributed Graph Generators
Network generators help to provide synthethic instances with controllable parameters by algorithm developers and researchers. KaGen provides generators for a large variety of network models, which are communication-free by making use of pseudorandomization and divide-and-conquer schemes.
- Graph Generation
- High performance computing
- Network Analysis
- + 1
- C++
- C
- CMake
- + 1