All software
BGC Viewer
A viewer for biosynthetic gene cluster data.
- bioinformatics
- Gene Clusters
- natural products
- + 1
- CSS
- Dockerfile
- HTML
- + 6
BIOMERO
a scalable and extensible image analysis framework
- biaflows
- bioimaging
- biomero
- + 9
- Dockerfile
- Python
- Shell
boatswain
Boatswain is a simple build system for docker images. It is especially useful when you have multiple docker images that depend on each other.
- containers
- docker
- Dockerfile
- Python
c3s-magic-wps
Web Processing Service for Climate Data Analysis in the MAGIC project.
- Dockerfile
- Makefile
- Python
- + 1
Calopy
A web-based, open-source platform for the analysis of indirect calorimetry data, measuring energy metabolism in animals and humans.
- Data analysis
- Data Visualization
- Health
- + 2
- Python
- Dockerfile
- CSS
case-e
case-e is an open-source electronic case report form (eCRF) system for designing clinical studies and collecting structured research data. It supports configurable forms, validation, role-based access, audit trails, versioning, and portable exports for transparent, FAIR-oriented research workflows.
- BIDS
- Biomedical Ontologies
- Clinical Research
- + 9
- Vue
- Python
- JavaScript
- + 4
CATMA (Computer Assisted Text Markup and Analysis)
CATMA is a practical and intuitive tool for literary scholars, students and other parties with an interest in text analysis and literary research. By helping perform many of the procedures useful for literary analysis that normally have to be carried out entirely manually.
- annotation
- Text Analysis
- Text Markup
- + 1
- Java
- CSS
- SCSS
- + 6
CDS ToolChain
The CDS ToolChain is being developed as part of the INTERPOLAR project of the Medical Informatics Initiative (MII). The CDS ToolChain is typically used in an MII data integration center (DIZ) and processes FHIR resources that comply with the MII Core Data Set (CDS) specification.
- FHIR
- OpenSource
- PLpgSQL
- R
- Shell
- + 2
Ceiba
Ceiba and its command-line interface Ceiba-cli solve the problem of computing, storing, and securely sharing computationally expensive simulation results.
- Optimized data handling
- Dockerfile
- Python
- Shell
- + 1
Cerise
Cerise is a service for running CWL workflows on HPC resources. You add software, tool descriptions, and connection information, then your user runs workflows whenever they want.
- High performance computing
- Optimized data handling
- Workflow technologies
- Common Workflow Language
- Dockerfile
- Makefile
- + 2
cerulean
A Python 3 library for talking to HPC clusters and supercomputers.
- High performance computing
- SFTP
- SLURM
- + 2
- Dockerfile
- Python
- Shell
Cesium-ncWMS
Web Application that visualizes data stored in the NetCDF format on a globe.
- Visualization
- CSS
- Dockerfile
- HTML
- + 1