All software
self-hosted runners
Collection of resources to set up GitHub runners on self-hosted infrastructure
- High performance computing
- Dockerfile
- Shell
Trimmomatic
Trimmomatic is a command line tool that performs a variety of functions for Illumina paired-end and single-end sequencing data, including sequence trimming and adapter removal. It is a flexible and efficient NGS preprocessing tool, which greatly improves downstream applications.
- Earth & Environment
- Illumina
- NGS
- Java
- Dockerfile
Umple
Umple allows generation of code in Java, PHP and other languages from a textual representation of UML state machines, associations and other modeling constructs, thus saving coding effort
- Code Generation
- Software Modeling
- State Machines
- + 1
- Batchfile
- C++
- CSS
- + 19
wps-command-line-tool-repository
A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.
- Earth & Environment
- Remote Procedure Calls
- Web Processing Service
- Java
- Scheme
- Python
- + 3
Allelic Variation Explorer
If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.
- Visualization
- AngelScript
- Dockerfile
- Python
AMPBA-workflow
AMPBA is a modular, Snakemake-based pipeline for reproducible amplicon metabarcoding, composable across markers and study designs, and lightweight enough to run independently on hardware from laptops to HPC clusters.
- Python
- Snakemake
- Shell
- + 2
Apatosaurus
Apatosaurus is a web app for creating, editing, visualizing, and analyzing a digital critical apparatus.
- htmx
- Textual Criticism
- TypeScript
- Svelte
- Python
- + 4
Arethusa
A backend-independent client-side annotation framework designed to: Make annotating accessible and enjoyable, lowering the entry barrier for the user by providing access to related resources and services at the point of annotation. Make the develop
- annotation
- JavaScript
- HTML
- SCSS
- + 3
Autodone
Autodone is a service for the automated, time-controlled publication of status updates on any Mastodon instance. The codebase is developed under a free license by the Department of Digital Humanities at the University of Cologne and is open to all interested users.
- Dissemination
- open source
- Outreach
- + 1
- Java
- HTML
- Dockerfile
haddock3-webapp
Web app to build haddock3 configuration and run it.
- CSS
- Dockerfile
- JavaScript
- + 2
i-VRESSE bartender
Bartender is a middleware web service to schedule jobs on various infrastructures.
- Workflow technologies
- Dockerfile
- Mako
- Python
base-repo
Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.
- Datacite
- data managment
- FAIR Data
- + 1
- Java
- Shell
- Dockerfile