All software
Overture Song
Quickly and reliably track genome metadata scattered across multiple Cloud storage systems.
- Cancer Genomics
- Metadata Management
- Metadata Validation
- Batchfile
- Dockerfile
- Go
- + 7
PHYLIP
PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables.
- phylogeny
- Stemmatology
- C
- Java
- Shell
- + 5
RESTful APE
RESTful API for the APE (Automated Pipeline Explorer) library.
- Java
- Program synthesis
- REST API
- + 1
- Dockerfile
- Java
RO Crate Java
A Java library to create and modify RO-Crates. The aim of this implementation is to not require too deep knowledge of the specification, and avoiding crates which do not fully comply to the specification, at the same time.
- data managment
- FAIR Data
- FAIR Software
- + 3
- Java
- HTML
- FreeMarker
- + 1
ROE
Designed for patient-specific prescription determination using personalized dose-response curves. Visualizes TCP and NTCP.
- Treatment Planning and dosimetry
- AGS Script
- Batchfile
- C
- + 20
Structure from Motion
Construct 3D pointclouds from a set of 2D images
- Dockerfile
- Java
- MATLAB
- + 2
TextLab
TextLab enables users to transcribe revisions in manuscript of a work, collate variant print versions, narrate the sequence of revision, display diplomatic and base versions, and generate a corrected, emended, and annotated reading text version as a critical edition of the work.
- Critical Edition
- digital publishing
- HTML
- JavaScript
- CSS
- + 8
T-Pen
T‑PEN is a web-based tool for working with images of manuscripts. Users attach transcription data (new or uploaded) to the actual lines of the original manuscript in a simple, flexible interface.
- Palaeography
- Transcription
- JavaScript
- Java
- CSS
- + 2
Typed PID Maker
The Typed PID Maker enables the creation, maintenance, and validation of PIDs. It ensures the PID contains typed, machine-actionable information using validation. This is especially helpful in the context of FAIR Digital Objects (FAIR DOs / FDOs).
- data managment
- FAIR Data
- FAIR Software
- + 2
- Java
- Hurl
- Shell
Variance Viewer
Variance-Viewer is an automatic open-source tool for text comparison with an extendable rule based variance analysis. Documents are compared on word basis, while their variance is displayed on character basis.
- Java
- JavaScript
- SCSS
- + 1
Verticox+
Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution is based on the Verticox algorithm from Dai et al., 2022. It has been adapted to be used within the Vantage6 framework.
- federated learning
- Java
- privacy preservation
- + 3
- Dockerfile
- Java
- Jinja
- + 4