All software
Cocoda
Web application to create, manage, and review mappings between entities from knowledge organization systems, such as classifications, authority files, ontologies, and thesauri.
- data modeling
- metadata
- open source
- + 1
- Vue
- JavaScript
- Shell
- + 4
dCache
dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.
- data managment
- FAIR Data
- Java
- HTML
- JavaScript
- + 12
Emo-spectre
Interactive visualization and exploration of multi modal time-series data and video
- Visualization
- Workflow technologies
- Common Workflow Language
- Dockerfile
- JavaScript
- + 5
eXist-db
eXist-db is a high-performance open source native XML database – a NoSQL document database and application platform built entirely around XML technologies.
- NoSQL
- open source
- XML
- Java
- XQuery
- GAP
- + 11
GameBus FHIR Layer
Enable FHIR service for GameBus and beyond
- Data Harmonization
- FHIR
- healthcare
- + 1
- Dockerfile
- Java
- Shell
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- CSS
- Dockerfile
- HTML
- + 6
Mahiru
A prototype for a federated, distributed data sharing and processing system.
- Data processing
- Data Sharing
- Policies
- + 1
- C
- Dockerfile
- Makefile
- + 2
MoReCluster
A Python-based framework for grouping and clustering of chemicals based on shared molecular response patterns extracted from CTD. It builds on the CGPD-tetramers to identify coherent substance groups that exhibit common molecular and phenotypic effects.
- Earth & Environment
- FAIR Data
- FAIR Software
- + 2
- Python
- Shell
- Dockerfile
mzRecal
mzRecal recalibrates mass spectrometry (MS1) data in mzML format, using peptide identifications in mzIdentML.
- mass spectrometry
- proteomics
- Dockerfile
- Go
- Makefile
- + 2
OpenMS
OpenMS is an open-source software C++ library for LC-MS data management and analyses. It offers an infrastructure for rapid development of mass spectrometry related software. OpenMS is free software available under the three clause BSD license and runs under Windows, macOS, and Linux.
- C++
- mass spectrometry
- metabolomics
- + 1
- Batchfile
- C
- C++
- + 13
PeriHub
PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.
- Data Visualization
- High performance computing
- Modelling
- + 2
- Python
- Svelte
- TypeScript
- + 7
quinex
quinex automates the large-scale extraction of quantitative information from text across many domains using lightweight and open language models
- information extraction
- Large Language Model (LLM)
- Measurement Extraction
- + 4
- Python
- TypeScript
- Shell
- + 3