All software
IRIDA
Integrated Rapid Infectious Disease Analysis (IRIDA) platform is a user-friendly, distributed, open source bioinformatics and analytical web platform that was developed to support real-time infectious disease outbreak investigations using whole genome sequencing data.
- genomics
- infectious disease
- CSS
- Dockerfile
- HTML
- + 6
ISAAC Chrome extension
Chrome Web Extension for support of the NWO ISAAC platform. This extension is not endorsed or developed by the NWO.
- BibTeX
- CITATION.cff
- DataCite
- + 1
- CSS
- HTML
- JavaScript
- + 1
i-VRESSE workflow-builder
Need to write a complex config file then the i-VRESSE workflow builder might be the tool for you.
- Workflow technologies
- CSS
- HTML
- JavaScript
- + 3
LORIS
Longitudinal Online Research and Imaging System (LORIS) is a web-based data and project management software for neuroimaging research studies. It is an OPEN SOURCE framework for storing and processing behavioural, clinical, neuroimaging and genetic data.
- Computational Neuroscience
- database
- neuroimaging
- + 3
- CSS
- GLSL
- Go Template
- + 10
MMSODA Toolbox for MATLAB
MATLAB toolbox for global optimization and state estimation of dynamic models using distributed computing.
- Batchfile
- C
- CSS
- + 5
PAVICS
PAVICS is a virtual laboratory facilitating the analysis of climate data. It provides access to several data collections ranging from observations, climate projections and reanalyses. It also provides a Python programming environment to analyze this data without the need to download it.
- analysis
- climate
- Climate change
- + 5
- CSS
- HTML
- JavaScript
- + 3
PeriHub
PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.
- Data Visualization
- High performance computing
- Modelling
- + 2
- Python
- Svelte
- TypeScript
- + 7
PhenoTips
PhenoTips is a software tool that makes it easy for clinicians and researchers to draw pedigrees and collect structured phenotype data for patients with genetic disorders.
- API
- deep phenotyping
- genogram
- + 6
- Batchfile
- CSS
- HTML
- + 4
pid-component
The pid-component is an easy to use web component that can be used to display PIDs, DOIs, ORCiDs, RORs, and other identifiers in an intuitive way. It is designed to be embeddable in any website and has a small form-factor mode that reduces its height to that of a single line of text.
- Angular
- Data Visualization
- FAIR
- + 19
- TypeScript
- MDX
- Vue
- + 4
quinex
quinex automates the large-scale extraction of quantitative information from text across many domains using lightweight and open language models
- information extraction
- Large Language Model (LLM)
- Measurement Extraction
- + 4
- Python
- TypeScript
- Shell
- + 3
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
SimVascular
The only fully open source software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
- Cardiovascular
- Fluid mechanics
- Medical image computing
- + 1
- Batchfile
- C
- C++
- + 9