All software
QUAST
QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.
- Data Visualization
- FAIR Software
- Genome assembly
- + 4
- AMPL
- C++
- Python
- + 12
CP2K
CP2K is a quantum chemistry and solid state physics software package running on graphics processing units and thousands of processing units. It is open-source and allows simulations, spectroscopy, vibrational analysis and energy minimization on a vast variety of theory levels.
- electronic structure
- GPU
- High performance computing
- + 5
- Fortran
- C
- Python
- + 13
anvi'o
anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.
- Data analysis
- Data Visualization
- Metagenomics
- + 4
- Python
- JavaScript
- HTML
- + 6
REMix
REMix is a powerful software for energy systems optimization. It can be used for the planning and techno-economical assessment of future multi-energy systems of any spatial, temporal and technological scope. REMix offers a wide range of methods and features that can be flexibly selected by the user.
- Energy
- Energy planning
- ESD
- + 5
- GAMS
- Python
- Dockerfile
CORSIKA
A Monte Carlo framework for the simulation of particle showers initiated in the Earth's atmosphere (or dense media) by high-energy particles from the cosmos.
- Astroparticle Physics
- Matter
- Monte Carlo simulation
- Fortran
- C++
- Nextflow
- + 2
ETHOS.FINE - Framework for Integrated Energy System Assessment
ETHOS.FINE provides a framework for modeling, optimizing and assessing energy systems. Systems with multiple regions, commodities and time steps can be modeled. Target of the optimization is the minimization of the total annual cost while considering technical and environmental constraints.
- Energy
- Energy planning
- ESD
- + 6
- Python
- Dockerfile
KeY
KeY is a deductive verification system for Java programs
- Deductive Verification
- First-Order Logic
- Formal Verification
- + 3
- Java
- ANTLR
- Perl
- + 14
OpenGeoSys
OpenGeoSys (OGS) is a scientific open source project for the development of numerical methods for the simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media.
- Earth & Environment
- geotechnics
- geothermal modeling
- + 5
- C++
- AGS Script
- TypeScript
- + 2
CrystFEL
CrystFEL is a suite of programs to process data from "serial crystallography" experiments.
- crystallography
- Matter
- structural biology
- + 2
- C
- Julia
- Python
- + 2
ETHOS.TSAM
tsam is a python package which uses different machine learning algorithms for the aggregation of time series.
- ESD
- ESD - Topic 1
- Python
PIConGPU
PIConGPU is a relativistic Particle-in-Cell code running on graphic processing units as well as regular multi-core processors. It is Open Source und is freely available for download. It can be used to study plasmas with relativistic dynamics, solving the Maxwell-Vlasov system of equations.
- C++
- CPU
- GPU
- + 9
- C++
- Python
- Shell
- + 5
ASPECT - The Advanced Solver for Planetary Evolution, Convection, and Tectonics
ASPECT is a code to simulate convection and tectonic processes in the Earth and other planetary bodies. It has grown from a mantle-convection code into a tool for many geodynamic applications, like glacial isostatic adjustment, lithospheric scale deformation, ore formation and two-phase flow.
- C++
- CFD
- Computational Fluid Dynamics
- + 6
- C++
- Python
- CMake
- + 10