All software
UltraMassExplorer (UME)
Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.
- analytical chemistry
- Carbon cycle
- Data analysis
- + 7
- R
- BibTeX
clumped-processing
Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV
- clumped isotope
- Data Analysis
- mass spectrometry
- + 3
- (HTML)
- (R)
rcrisp
rcrisp provides tools to automate the morphological delineation of riverside urban areas.
- Data Analysis
- geospatial
- R
- + 1
- (R)
- (TeX)
dataquieR
dataquieR is an R package designed to conduct automated and standardized data quality assessments. It can be applied to all sorts of tabular data. Spreadsheet-type metadata can be used to specify descriptions, expectations, and requirements about the data.
- Cohort studies
- data quality
- data quality assessment
- + 11
- R
- JavaScript
- HTML
- + 1
DataSHIELD
DataSHIELD ecosystem is an infrastructure and series of R packages that enables the remote and non-disclosive analysis of sensitive research data. It has been used with real world and consented research data for over 10 years.
- data privacy
- OpenSource
- R
- R
ggmice
The {ggmice} package provides visualization tools for incomplete and imputed data in R, compatible with {mice} and {ggplot2}.
- Data Analysis
- R
- Statistics
- + 1
- (R)
MemRBC
MemRBC is an R package for spectral modeling of red blood cell shapes in R. It is the result of open science research, demonstrating the idea of hi-level apps with metadata creation in a lightweight obejct oriented approach.
- cell shape
- Helfrich
- R
- + 5
- R
- C++
- C
rcoins
Identify continuous lines in a spatial network.
- geospatial
- Networks
- R
- (Python)
- (R)
rcrisp Shiny app
Shiny web app for the rcrisp software package.
- geospatial
- R
- shiny
- + 1
- (R)
Remote BMI
Remote BMI allows you to communicate with Basic Model Interface enabled numerical models using a RESTful API
- Basic Model Interface
- BMI
- julia
- + 4
- (Batchfile)
- (Dockerfile)
- (Julia)
- + 3
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xlsx exports into tidy, nested tibbles, enabling reproducible analysis, preprocessing checks, advanced visualisation, and statistics for open metabolic research.
- bioconductor
- metabolism
- R
- + 2
- (R)
Tilburg University Coding Café
Materials for Tilburg University's Coding Café
- community
- learning materials
- presentation
- + 3