All software
anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
- bioinformatics
- data managment
- FAIR Data
- + 1
- Python
Arctic Web Map
Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.
- data collection
- python
- wildlife
- (CSS)
- (JavaScript)
- (Python)
- + 1
beos
Calculation of the buckling behavior of composite shells
- Fortran
- python
- Python
BIOMERO
a scalable and extensible image analysis framework
- biaflows
- bioimaging
- biomero
- + 9
- (Dockerfile)
- (Python)
- (Shell)
boxbeam
Computation of effective cross-sectional properties of composite beams
- Fortran
- python
- Python
Brei
a minimalist workflow system in Python
- python
- Workflow technologies
- (Nix)
- (Python)
check-deps
This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.
- Dependency Hell
- python
- Workflow technologies
- (Awk)
- (CSS)
- (Makefile)
- + 1
CIMPredict
CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.
- Blue Health Tech
- Data analysis
- Health
- + 2
- Python
- R
Collector App
The Collector App is the backend of the biotic database system called CRITTERBASE. It is used for the import and administration of the underlying data.
- Biota
- data
- data warehouse
- + 7
DataDesc
The framework surrounding DataDesc, a metadata schema for software documentation with focus on interfaces, comes with a machine-actionable metadata exchange format and a software toolkit supporting the documentation, extraction and publication of software metadata.
- data managment
- ESD
- FAIR Data
- + 4
- Python
- Shell
- Jupyter Notebook
DataFlow
A comprehensive framework for automated data processing and manual postprocessing, including quality control and flagging. Modular and extensible design allows to create customizable pipelines and monitor their performance throughout the data lifecycle.
- data managment
- Data Visualization
- Pipeline
- + 2
- TSX
- Python
- TypeScript
- + 2
datasalad
A Python library for working with data in the vicinity of Git and git-annex. A focus is efficient communication with subprocesses, which read and produce data in some format.
- DataLad
- git
- git-annex
- + 1
- Python
- Jinja
- Batchfile