All software
PyPlaque
PyPlaque is an open-source Python package for automated analysis of virus plaque assays. It quantifies plaque morphology, size, and intensity from plate images, integrates with Python data tools, and enables reproducible, customizable workflows for high-throughput infection biology studies.
- Health
- Image processing
- Omics
- + 1
- Jupyter Notebook
- Python
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
ROBIST
Robust Optimization by Iterative Scenario Sampling and Statistical Testing
- optimization
- python
- (Python)
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
sirup
Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.
- ip-rotation
- openvpn
- python
- + 1
- (Python)
- (Shell)
snakemake-wrf
A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.
- geospatial
- High performance computing
- python
- + 1
- ("Jupyter Notebook")
- (Python)
- (Shell)
VASCA
The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.
- Astronomy
- catalogue
- Data analysis
- + 6
- Jupyter Notebook
- Python
WAM2layers
WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).
- atmospheric rivers
- ERA5
- hydrological cycle
- + 4
- ("Jupyter Notebook")
- (Python)
- (Shell)
Argon Laser-Plasma Thruster - Design and Test of a Laboratory Model - Processing and Analysis Code
Argon Laser-Plasma Thruster - Design and Test of a Laboratory Model - Processing and Analysis Code
- argon
- laser
- laser-sustained plasma
- + 4
- (JSON)
- ("Jupyter Notebook")
- (Markdown)
- + 5
FluvGAN: Python scripts to test generating and inverting fluvial deposits using GANs
FluvGAN: Python scripts to test generating and inverting fluvial deposits using GANs
- deep generative modelling
- deep learning
- GAN
- + 4
G-code generation Python script
G-code generation Python script
- python
JAT - Jarkus Analysis Toolbox
JAT - Jarkus Analysis Toolbox
- coastal profile
- jarkus
- python