All software
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
sirup
Sirup is an open-source Python package that makes it easy to connect to, and rotate across, VPN servers provided by services such as ProtonVPN and Surfshark.
- ip-rotation
- openvpn
- python
- + 1
- Python
- Shell
snakemake-wrf
A snakemake workflow to run WRF, including pre- and postprocessing. See our blog post for a detailed description.
- geospatial
- High performance computing
- python
- + 1
- Jupyter Notebook
- Python
- Shell
supersonic-effects
A Python package to model ozone column changes and radiative effects in response to various aircraft emissions at different altitudes over specific regions. The model combines empirical emission sensitivities to estimate effects of supersonic transport on ozone and radiation.
- aircraft
- Earth & Environment
- Earth System Modelling
- + 4
- Python
VASCA
The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.
- Astronomy
- catalogue
- Data analysis
- + 6
- Jupyter Notebook
- Python
WAM2layers
WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).
- atmospheric rivers
- ERA5
- hydrological cycle
- + 4
- Python
- Jupyter Notebook
- Shell
Argon Laser-Plasma Thruster - Design and Test of a Laboratory Model - Processing and Analysis Code
Argon Laser-Plasma Thruster - Design and Test of a Laboratory Model - Processing and Analysis Code
- argon
- laser
- laser-sustained plasma
- + 4
- Other
- TeX
- Jupyter Notebook
- + 5
FluvGAN: Python scripts to test generating and inverting fluvial deposits using GANs
FluvGAN: Python scripts to test generating and inverting fluvial deposits using GANs
- deep generative modelling
- deep learning
- GAN
- + 4
G-code generation Python script
G-code generation Python script
- python
JAT - Jarkus Analysis Toolbox
JAT - Jarkus Analysis Toolbox
- coastal profile
- jarkus
- python
Keithley_Arduino_data_logger_and_controller
Data and code underlying Chapter 5 of the PhD thesis "Advanced magnetocaloric regenerators for heat pump applications"
- 3D printed blocks
- data analysis Python code
- data collection Python code
- + 7
- Other
- Python
- Markdown
Purcell filter simulation scripts
Purcell filter simulation scripts
- cqed
- cross-dephasing
- dicarlo
- + 14