All software
Amazing GitHub Research Repo
This is a showcase of all the amazing features that GitHub offers for your research project
- Data Science
- GitHub Actions
- pandas
- + 3
- Python
Anatomy Matters
Reproducible analysis code for anatomical tumor–immune archetypes in diffuse large B-cell lymphoma.
- computational pathology
- diffuse large B-cell lymphoma
- jupyter notebooks
- + 4
- Jupyter Notebook
- PowerShell
- Python
- + 1
anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
- bioinformatics
- data managment
- FAIR Data
- + 1
- Python
Anomx
Turn complex time-series data into actionable intelligence. Anomx combines AI agents, anomaly detection and predictive models to connect signals, investigate change and guide action. Built primarily for on-premises deployment, with hosted SaaS coming soon.
- AI agents
- anomaly detection
- Data analysis
- + 5
Arctic Web Map
Arctic Web Map (AWM) is an Arctic-specific web mapping tool allowing researchers to customize map projections for scientifically accurate visualization and analysis, a function that is critical for arctic research but missing in existing web mapping platforms.
- data collection
- python
- wildlife
- CSS
- JavaScript
- Python
- + 1
beos
Calculation of the buckling behavior of composite shells.
- Fortran
- python
- Python
BIOMERO
a scalable and extensible image analysis framework
- biaflows
- bioimaging
- biomero
- + 9
- Dockerfile
- Python
- Shell
boxbeam
Computation of effective cross-sectional properties of composite beams.
- Fortran
- python
- Python
Brei
a minimalist workflow system in Python
- python
- Workflow technologies
- Nix
- Python
Calopy
A web-based, open-source platform for the analysis of indirect calorimetry data, measuring energy metabolism in animals and humans.
- Data analysis
- Data Visualization
- Health
- + 2
- Python
- Dockerfile
- CSS
check-deps
This Python script checks whether a given set of software dependencies is met. This script itself is completely stand-alone and depends only on Python being installed. You may include this script along with a `dependencies.ini` in a project that has a diverse set of dependencies.
- Dependency Hell
- python
- Workflow technologies
- Awk
- CSS
- Makefile
- + 1
CIMPredict
CIMPredict delivers an alternative to the FRAX fracture risk calculator for osteoporosis patients based on a new Calcium isotope marker in blood.
- Blue Health Tech
- Data analysis
- Health
- + 2
- Python
- R